Welcome to GREAT’s documentation!¶
Web application¶
A web application accessible by a web adress is under construction. For now, the GREAT shiny app is available as an R package.
Install the GREAT web application¶
Warning : Install XQuartz on Mac before launching GREAT app, because GREAT app needs X11.
Requirements : R version >= 3.5.0
Installation of required R packages :
1 2 3 | install.packages("shiny")
install.packages("devtools")
install.packages("https://gitlab.com/avelt/great/raw/master/great_0.1.0.tar.gz", repos = NULL, type="source")
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Launch Shiny app¶
1 2 | library("great")
great::shiny_greatshinyapp()
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Get the code¶
The source code of the GREAT’s RNA-seq pipeline is available on Gitlab. The source code for the Shiny R package is available on Gitlab.
Technical contact : amandine.velt@inra.fr
Scientific contact : camille.rustenholz@inra.fr